All posts by erin

Immunizations For Fish

Most of us are pretty familiar with the concept of immunizations to help safeguard us against disease by giving our bodies a heads up, jump starting our immune system so it will know how to respond when it encounters disease. But now, researchers have successfully immunized fish against the Ich, the white spot disease.

The LA Times reported on the new research, which was presented recently at the American Chemical Society annual meeting. Ich kills 50-100% of fish that it infects, by affecting their breathing and making them lethargic. The disease is characterized by white patches that appear on a fish’s body. It is common in farm fish that are grown in close quarters.

The researchers (from the US Department of Agriculture, Agricultural Research Service) developed two forms of the vaccine. First, the vaccine was created in the form of a shot, like a typical vaccine administered to a person, but the approach proved difficult to administer to hundreds of small fish. The researchers then developed a bath containing the vaccine that showed a 60% success rate at protecting the fish from Ich.

The researchers still have to overcome the obstacle of how to grow enough of the parasite for the demand (there is a huge volume of fish farms, each containing hundreds to thousands of fish). But for now, the mere fact that researchers have found a way to adapt a human technology for a lesser organism is particularly interesting.

Looks Like A Fish, But Its An Octopus

I found this interesting article in the BBC today about an octopus in Borneo that exhibits mimicry of certain fish. Researchers used a genetic analysis to study the behavior of the Indonesian Mimic Octopus (I know clever name, right?) What they found was that the octopus evolved the ability to mimic toxic fish, sea snakes, and other predators to help ward off its own.

Probably the most well known example of mimicry is in butterflies that exhibit the coloring or markings of other toxic species to keep themselves from being eaten by birds. Of course, I have an article about this: Genetic Hotspots Solve Mimicry Mystery from BioTechniques.

Is That A Tiger In Your Purse, Or Are You Just Scamming Security?

You’ve got all your liquids and gels in 3oz. bottles sealed in a clear plastic bag, you’ve stowed all your electronics in the same place for easy scanning, you’ve removed your laptop from its case, and taken off your shoes, now all thats left is the small issue of the tiger cub in your bag, and you’ll be ready for take off.

The BBC recently reported on a woman in Bangkok who tried to board a plane with a tranquilized tiger cub in her checked bag. She placed the cub in among stuffed tiger toys to try to hide it. Needless to say the live tiger cub showed up when the bag was scanned, and the woman was arrested for attempted animal smuggling. She was trying to take it to Iran.
Really? It astounds me how brazen some criminals are. Its a sad state of affairs when criminals think so little of the authorities that they attempt such things. I have to think that this woman can’t be the first to ever smuggle an animal in her luggage. What I’d like to know is what can be done about it?
I know I keep relating current issues to past articles I’ve written, but this incident reminded me of an article from earlier this year on using genetics to crack down on chimpanzee trafficking in Africa. Essentially, the researchers genetically map the animals rescued from poachers to determine their family lines, and definitively say what regions that poachers are getting the animals from, to give the authorities a better idea of where to increase their presence.

Yale Lab Heist Story Continues

Over the summer I reported on a story out of Yale University about a researcher who was accused of stealing laboratory equipment as part of his divorce proceedings. The New Haven Register originally reported the story, and it was slanted at best because they only based their story on public record (police reports, the divorce proceedings) and the opinion of the researcher’s ex-wife.

I did a follow up to the Register story, and got the researcher to comment easily. He replied to my email right away and thanked me for the opportunity to get his side of the story. According to him, no other news source had ever contacted him directly for an interview. So I find the Register and The Yale Daily’s News’ claims that he didn’t return repeated requests for an interview sort of suspect. I think they tried to contact him… but his Yale contacts are long defunct. His gmail is available on the web very easily if you search his name.

But anyway, the Yale Daily News did a follow up on the story based on the Register and they do mention BioTechniques and a quote that the researcher gave me, so that is sort of cool.

The Yale Daily News:
http://www.yaledailynews.com/news/university-news/2010/08/27/yale-scientist-suspected-stealing-lab-equipment/

The New Haven Register:
http://www.nhregister.com/articles/2010/06/29/news/new_haven/aa1_tue_nelars062910.txt

My BioTechniques Story:
http://www.biotechniques.com/news/22K-worth-of-lab-equipment-seized-from-former-Yale-researchers-home/biotechniques-299798.html?autnID=288841

Wheat Genome Adds to Available Draft Sequences

Scientists have released the draft sequence of the wheat genome. There are new draft sequences being released all the time as genome sequencing capabilities have increased. While they are all important because they increase researchers’ overall knowledge of the organisms that have been sequenced and how all organisms interact and are interrelated, some sequences have a far greater impact than others.

I’ve written about a few genome sequences that were released in the last year for BioTechniques, but I thought the wheat genome was worth mentioning because of the obvious impact it will have on the food industry. Whenever a staple crop is sequenced it adds to researchers abilities to tackle issues like world hunger by making super foods, but that is an issue which is controversial in and of itself. The more we learn, the more we can do. But just because we can make genetically modified foods that thrive in unconventional climates, should we?

Also just a note about why it is called a draft sequence and not just the sequence: every genome that is sequenced starts as a draft, when researchers sequence a genome there are parts of it that they either don’t understand the function of, or that they haven’t been able to unravel. So, the working genome that researchers use is a draft, it is what researchers will use compare their own sequencing work with that organism, to check for accuracy. But it is just a draft, drafts can be amended later if need be. Essentially, it goes back to the main nature of scientific exploration: researchers are constantly building on their knowledge base, which is why most scientific findings are left open to be improved upon as researchers learn even more.

Draft sequences I’ve reported on in the last year:
Horse Genome
Corn Genome
Hydra Genome
HIV Genome
King Tut’s Genome